STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN56115.1Hypothetical protein. (201 aa)    
Predicted Functional Partners:
KRN56116.1
Pilus assembly protein CpaF.
 
  
 0.971
KRN56118.1
Hypothetical protein.
 
  
 0.971
KRN56113.1
Hypothetical protein.
 
  
 0.966
KRN56117.1
Hypothetical protein.
 
  
 0.966
KRN56114.1
Hypothetical protein.
 
     0.935
KRN56085.1
Type II secretion system F domain protein.
 
  
 0.923
KRN55697.1
Integral membrane sensor signal transduction histidine kinase.
    
 0.923
KRN56084.1
Type II secretion system protein.
 
  
 0.922
KRN56119.1
Hypothetical protein.
 
     0.877
KRN55675.1
Transcriptional regulator, TrmB.
  
 0.857
Your Current Organism:
Atopobium minutum
NCBI taxonomy Id: 1381
Other names: A. minutum, ATCC 33267, Bacteroides minutum, CCUG 31167, DSM 20586, LMG 9439, LMG:9439, Lactobacillus minutum (sic), Lactobacillus minutus, NCFB 2751, NCIMB 702751, VPI 9428
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.