STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN56162.1Sugar-specific permease, SgaT UlaA. (469 aa)    
Predicted Functional Partners:
KRN56163.1
Hypothetical protein.
 
 
 0.988
KRN56161.1
PTS IIA-like nitrogen-regulatory protein PtsN.
 
 
 0.981
KRN55852.1
Hypothetical protein.
 
 
 0.971
KRN56171.1
Hypothetical protein.
 
 
 0.966
KRN56158.1
Hypothetical protein.
 
 
 0.959
KRN56197.1
PTS system, lactose cellobiose-specific IIB component.
 
 
 0.959
KRN56157.1
Hypothetical protein.
 
 
 0.930
KRN56156.1
PTS system ascorbate-specific transporter subunit IIC.
 
  
 
0.899
KRN55854.1
Hypothetical protein.
  
 
 0.899
KRN55913.1
Phosphocarrier protein HPr.
    
 0.884
Your Current Organism:
Atopobium minutum
NCBI taxonomy Id: 1381
Other names: A. minutum, ATCC 33267, Bacteroides minutum, CCUG 31167, DSM 20586, LMG 9439, LMG:9439, Lactobacillus minutum (sic), Lactobacillus minutus, NCFB 2751, NCIMB 702751, VPI 9428
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.