STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN55028.1Glycosyl transferase family 2. (393 aa)    
Predicted Functional Partners:
KRN55030.1
Teichoic acids export ATP-binding protein TagH.
 
  
 0.852
KRN55029.1
Glycosyl transferase family 2.
 
    
0.845
KRN55749.1
Amylopullulanase.
   
 
 0.822
KRN55031.1
ABC transporter integral membrane subunit.
  
  
 0.801
KRN55027.1
Glycosyl transferase family 2.
 
    
0.784
KRN55026.1
Glycosyl transferase family 2.
 
    
0.757
KRN56554.1
Glycosyl transferase family protein.
 
     0.621
KRN55328.1
dTDP-glucose 4,6-dehydratase.
 
 
 0.585
KRN55322.1
Hypothetical protein.
  
 
 0.472
pyrC
Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.
       0.465
Your Current Organism:
Atopobium minutum
NCBI taxonomy Id: 1381
Other names: A. minutum, ATCC 33267, Bacteroides minutum, CCUG 31167, DSM 20586, LMG 9439, LMG:9439, Lactobacillus minutum (sic), Lactobacillus minutus, NCFB 2751, NCIMB 702751, VPI 9428
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.