STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN55084.1Hypothetical protein. (433 aa)    
Predicted Functional Partners:
KRN55702.1
Protein serine threonine phosphatase.
 
 
 0.785
leuS
leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.689
KRN56092.1
Hypothetical protein.
   
 
 0.687
KRN54969.1
FHA domain containing protein.
   
 
 0.687
KRN55653.1
Hypothetical protein.
   
 
 0.687
KRN55703.1
FHA domain-containing protein.
   
 
 0.687
KRN55704.1
FHA domain-containing protein.
   
 
 0.687
KRN55701.1
Peptidoglycan glycosyltransferase; Belongs to the SEDS family.
 
 
 0.580
nusA
Transcription termination factor NusA; Participates in both transcription termination and antitermination.
  
    0.519
rimP
Hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.
       0.515
Your Current Organism:
Atopobium minutum
NCBI taxonomy Id: 1381
Other names: A. minutum, ATCC 33267, Bacteroides minutum, CCUG 31167, DSM 20586, LMG 9439, LMG:9439, Lactobacillus minutum (sic), Lactobacillus minutus, NCFB 2751, NCIMB 702751, VPI 9428
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.