STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN55136.1Hypothetical protein. (1310 aa)    
Predicted Functional Partners:
KRN55314.1
Penicillin-binding protein, 1A family.
    
 0.931
KRN54967.1
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
   
 
 0.925
KRN55701.1
Peptidoglycan glycosyltransferase; Belongs to the SEDS family.
  
 
 0.914
KRN55691.1
Hypothetical protein.
  
 
 0.906
KRN54903.1
Penicillin-binding protein 2.
  
 
 0.846
KRN55158.1
Peptidoglycan glycosyltransferase.
  
 
 0.846
KRN54978.1
Hypothetical protein.
  
 
 0.786
KRN55945.1
Lytic transglycosylase catalytic.
    
 0.612
KRN55137.1
Glyoxalase bleomycin resistance protein dioxygenase.
  
    0.563
KRN55188.1
Serine threonine protein phosphatase.
    
  0.456
Your Current Organism:
Atopobium minutum
NCBI taxonomy Id: 1381
Other names: A. minutum, ATCC 33267, Bacteroides minutum, CCUG 31167, DSM 20586, LMG 9439, LMG:9439, Lactobacillus minutum (sic), Lactobacillus minutus, NCFB 2751, NCIMB 702751, VPI 9428
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