STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN55205.1Hypothetical protein. (537 aa)    
Predicted Functional Partners:
KRN55711.1
Hypothetical protein.
 
   
 0.795
KRN56120.1
Hypothetical protein.
 
   
 0.789
KRN55912.1
Hypothetical protein.
  
     0.763
KRN55273.1
Hypothetical protein.
   
    0.546
KRN54089.1
Hypothetical protein.
   
    0.546
KRN56167.1
Phosphotriesterase-related protein.
  
     0.499
rsmH
S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
  
     0.495
rplX
Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.
  
     0.467
KRN56008.1
Hypothetical protein.
     
 0.429
KRN56128.1
Hypothetical protein.
     
 0.429
Your Current Organism:
Atopobium minutum
NCBI taxonomy Id: 1381
Other names: A. minutum, ATCC 33267, Bacteroides minutum, CCUG 31167, DSM 20586, LMG 9439, LMG:9439, Lactobacillus minutum (sic), Lactobacillus minutus, NCFB 2751, NCIMB 702751, VPI 9428
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.