STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN55360.1Hypothetical protein. (451 aa)    
Predicted Functional Partners:
KRN55199.1
D-methionine transport system permease protein MetI.
  
 0.968
KRN55200.1
Abc transporter substrate-binding protein; Belongs to the nlpA lipoprotein family.
  
 0.964
KRN55361.1
Hypothetical protein.
 
     0.949
KRN55357.1
Atp-dependent helicase.
 
     0.896
KRN55817.1
Iron (metal) dependent repressor, DtxR family protein.
   
   0.758
KRN55359.1
ABC superfamily ATP binding cassette transporter, ABC protein.
    
  0.634
KRN55818.1
Hypothetical protein.
   
 
 0.526
KRN55196.1
Hypothetical protein.
  
 
  0.514
KRN55358.1
Hypothetical protein.
       0.499
KRN55232.1
Homoserine dehydrogenase.
   
 
 0.465
Your Current Organism:
Atopobium minutum
NCBI taxonomy Id: 1381
Other names: A. minutum, ATCC 33267, Bacteroides minutum, CCUG 31167, DSM 20586, LMG 9439, LMG:9439, Lactobacillus minutum (sic), Lactobacillus minutus, NCFB 2751, NCIMB 702751, VPI 9428
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