STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN55410.1Hypothetical protein. (253 aa)    
Predicted Functional Partners:
KRN55411.1
Hypothetical protein.
 
 0.989
KRN55697.1
Integral membrane sensor signal transduction histidine kinase.
 
 0.985
KRN54913.1
ATPase histidine kinase DNA gyrase B HSP90 domain protein.
 
 0.952
KRN56521.1
Alkaline phosphatase synthesis sensor protein PhoR.
 0.941
KRN56175.1
Signal transduction histidine kinase.
 
 0.916
KRN55409.1
Pyruvate ferredoxin flavodoxin oxidoreductase.
  
 
 0.828
KRN55496.1
Histidine kinase.
 0.806
KRN55675.1
Transcriptional regulator, TrmB.
  
 0.783
KRN55962.1
Sensor histidine kinase.
 
 0.783
KRN55413.1
Hypothetical protein.
 
     0.728
Your Current Organism:
Atopobium minutum
NCBI taxonomy Id: 1381
Other names: A. minutum, ATCC 33267, Bacteroides minutum, CCUG 31167, DSM 20586, LMG 9439, LMG:9439, Lactobacillus minutum (sic), Lactobacillus minutus, NCFB 2751, NCIMB 702751, VPI 9428
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.