STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN55415.1Hypothetical protein. (252 aa)    
Predicted Functional Partners:
KRN55137.1
Glyoxalase bleomycin resistance protein dioxygenase.
  
  
 0.628
tadA
tRNA-specific adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
  
  
 0.613
KRN55416.1
Hypothetical protein.
       0.516
KRN55388.1
Hypothetical protein.
  
  
 0.512
KRN54120.1
Hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
  
 
 0.492
KRN55432.1
Alkyl hydroperoxide reductase F subunit.
 
 
 
 0.480
KRN55904.1
Hypothetical protein.
 
 
  0.480
KRN55077.1
Riboflavin biosynthesis protein RibF; Belongs to the ribF family.
    
 0.458
KRN55414.1
Hypothetical protein; Belongs to the peptidase S8 family.
       0.452
KRN54958.1
Class V aminotransferase.
  
 
  0.424
Your Current Organism:
Atopobium minutum
NCBI taxonomy Id: 1381
Other names: A. minutum, ATCC 33267, Bacteroides minutum, CCUG 31167, DSM 20586, LMG 9439, LMG:9439, Lactobacillus minutum (sic), Lactobacillus minutus, NCFB 2751, NCIMB 702751, VPI 9428
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.