Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KRN55551.1Collagen-binding protein A. (2291 aa)    
Predicted Functional Partners:
KRN56477.1
Hypothetical protein.
  
     0.731
KRN54105.1
Hypothetical protein.
  
     0.659
KRN56474.1
Metallo-beta-lactamase family protein.
  
     0.605
KRN54104.1
Hypothetical protein.
  
     0.604
KRN56472.1
Hypothetical protein.
  
     0.603
KRN56579.1
Hypothetical protein.
  
     0.483
KRN56008.1
Hypothetical protein.
 
  
 0.460
KRN55202.1
Hypothetical protein.
  
     0.459
KRN56478.1
Hypothetical protein.
  
     0.457
KRN56476.1
Hypothetical protein.
  
     0.456
Your Current Organism:
Atopobium minutum
NCBI taxonomy Id: 1381
Other names: A. minutum, ATCC 33267, Bacteroides minutum, CCUG 31167, DSM 20586, LMG 9439, LMG:9439, Lactobacillus minutum (sic), Lactobacillus minutus, NCFB 2751, NCIMB 702751, VPI 9428
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