Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KRN55571.1Hypothetical protein. (154 aa)    
Predicted Functional Partners:
KRN55569.1
Fructose-specific phosphotransferase enzyme IIB component.
 
 
 0.999
KRN55567.1
PTS system mannose fructose sorbose family IID component.
 
 0.991
KRN55568.1
PTS system N-acetylgalactosamine-specific IIC component.
 
 0.990
KRN55790.1
PTS family mannose fructose sorbose porter component IID.
 
 0.989
KRN55789.1
PTS system mannose-specific transporter subunit IIC.
 
 0.987
KRN55754.1
Mannose-specific pts system component iic.
 
 0.976
KRN55755.1
Mannose-specific PTS system component IID.
 
 0.949
KRN55753.1
Hypothetical protein.
 
 
 0.927
KRN55227.1
Hypothetical protein.
   
 0.919
KRN55913.1
Phosphocarrier protein HPr.
   
 0.919
Your Current Organism:
Atopobium minutum
NCBI taxonomy Id: 1381
Other names: A. minutum, ATCC 33267, Bacteroides minutum, CCUG 31167, DSM 20586, LMG 9439, LMG:9439, Lactobacillus minutum (sic), Lactobacillus minutus, NCFB 2751, NCIMB 702751, VPI 9428
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