STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN55706.1NAD-dependent malic enzyme. (270 aa)    
Predicted Functional Partners:
KRN55707.1
Malate dehydrogenase.
     0.988
KRN55409.1
Pyruvate ferredoxin flavodoxin oxidoreductase.
  
 
 0.974
KRN56076.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 0.946
KRN55734.1
Formate acetyltransferase.
   
 
 0.898
KRN54923.1
Pyruvate, phosphate dikinase; Belongs to the PEP-utilizing enzyme family.
  
 
 0.895
KRN56200.1
4Fe-4S ferredoxin iron-sulfur binding domain protein.
    
 0.894
KRN55369.1
Hydrogenase large subunit domain protein.
    
 0.884
nadE
Glutamine-dependent NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
  0.881
KRN55793.1
Formate acetyltransferase 2.
   
 
 0.862
cutC
Formate acetyltransferase 2; Glycine radical enzyme that catalyzes the cleavage of a C-N bond in choline, producing trimethylamine (TMA) and acetaldehyde. Belongs to the glycyl radical enzyme (GRE) family. CutC subfamily.
   
 
 0.862
Your Current Organism:
Atopobium minutum
NCBI taxonomy Id: 1381
Other names: A. minutum, ATCC 33267, Bacteroides minutum, CCUG 31167, DSM 20586, LMG 9439, LMG:9439, Lactobacillus minutum (sic), Lactobacillus minutus, NCFB 2751, NCIMB 702751, VPI 9428
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