STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN55838.1Gluconate 5-dehydrogenase. (293 aa)    
Predicted Functional Partners:
KRN55409.1
Pyruvate ferredoxin flavodoxin oxidoreductase.
   
 0.987
KRN56200.1
4Fe-4S ferredoxin iron-sulfur binding domain protein.
   
 0.956
KRN55195.1
Aldehyde-alcohol dehydrogenase 2; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 0.946
KRN56572.1
Hypothetical protein.
     
 0.934
KRN56573.1
PTS system beta-glucoside-specific EIIBCA component.
     
 0.934
KRN56574.1
Hypothetical protein.
     
 0.934
KRN55224.1
Beta-glucosides PTS, EIIBCA.
     
 0.934
KRN54118.1
Glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
 0.897
KRN55800.1
RpiB LacA LacB family sugar-phosphate isomerase.
  
 
 0.894
KRN56035.1
PTS system fructose subfamily transporter subunit IIC.
  
 0.878
Your Current Organism:
Atopobium minutum
NCBI taxonomy Id: 1381
Other names: A. minutum, ATCC 33267, Bacteroides minutum, CCUG 31167, DSM 20586, LMG 9439, LMG:9439, Lactobacillus minutum (sic), Lactobacillus minutus, NCFB 2751, NCIMB 702751, VPI 9428
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.