STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN55844.1Hypothetical protein. (62 aa)    
Predicted Functional Partners:
KRN55841.1
Hypothetical protein.
 
 
 0.949
KRN55843.1
Hypothetical protein.
 
 
 0.949
KRN55845.1
PTS system lactose cellobiose family transporter subunit IIC.
 
     0.918
KRN55440.1
Hypothetical protein.
 
 
 0.917
KRN55441.1
Hypothetical protein.
 
 
 0.874
KRN55846.1
Outer surface protein.
 
  
 0.802
KRN55442.1
PTS system lactose cellobiose family transporter subunit IIC.
  
     0.759
KRN56571.1
aryl-phospho-beta-D-glucosidase BglA; Belongs to the glycosyl hydrolase 1 family.
  
 
 0.654
KRN55094.1
6-phospho-beta-glucosidase; Belongs to the glycosyl hydrolase 1 family.
  
 
 0.654
KRN55842.1
RpiR family transcriptional regulator.
     
 0.602
Your Current Organism:
Atopobium minutum
NCBI taxonomy Id: 1381
Other names: A. minutum, ATCC 33267, Bacteroides minutum, CCUG 31167, DSM 20586, LMG 9439, LMG:9439, Lactobacillus minutum (sic), Lactobacillus minutus, NCFB 2751, NCIMB 702751, VPI 9428
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.