STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN55857.1L-ribulose-5-phosphate 4-epimerase. (236 aa)    
Predicted Functional Partners:
KRN55858.1
L-xylulose 5-phosphate 3-epimerase.
  
 0.930
KRN54957.1
Ribulose-5-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
    
 0.880
KRN55425.1
Sugar kinase.
  
 
 0.862
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
  
 
 0.820
KRN55856.1
L-ascorbate 6-phosphate lactonase.
     
 0.769
KRN56169.1
L-xylulose 5-phosphate 3-epimerase.
  
 0.725
KRN55855.1
FG-GAP repeat-containing protein.
       0.599
KRN55764.1
Triosephosphate isomerase.
  
 
 0.531
KRN56168.1
Hypothetical protein.
 
 
 0.509
KRN56033.1
Ketose-bisphosphate aldolase.
  
 
 0.470
Your Current Organism:
Atopobium minutum
NCBI taxonomy Id: 1381
Other names: A. minutum, ATCC 33267, Bacteroides minutum, CCUG 31167, DSM 20586, LMG 9439, LMG:9439, Lactobacillus minutum (sic), Lactobacillus minutus, NCFB 2751, NCIMB 702751, VPI 9428
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.