STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN55925.1Hypothetical protein. (436 aa)    
Predicted Functional Partners:
KRN55924.1
Hypothetical protein.
       0.773
KRN56027.1
Zinc ABC transporter ATP-binding protein.
  
  
  0.714
KRN56044.1
Zinc import ATP-binding protein ZnuC.
  
  
  0.712
KRN55412.1
ABC-type antimicrobial peptide transport system protein.
  
     0.692
KRN55406.1
Binding-protein-dependent transport systems inner membrane component.
 
  
  0.583
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
  
     0.469
KRN56014.1
Chelated iron transport system membrane protein YfeB.
  
  
  0.457
KRN55198.1
ABC-type metal ion transport system, ATPase component; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Methionine importer (TC 3.A.1.24) family.
  
     0.452
KRN55430.1
Short-chain dehydrogenase reductase SDR.
  
    0.429
KRN54130.1
Oligopeptide transport ATP-binding protein AppF.
  
     0.428
Your Current Organism:
Atopobium minutum
NCBI taxonomy Id: 1381
Other names: A. minutum, ATCC 33267, Bacteroides minutum, CCUG 31167, DSM 20586, LMG 9439, LMG:9439, Lactobacillus minutum (sic), Lactobacillus minutus, NCFB 2751, NCIMB 702751, VPI 9428
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.