STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN55937.1Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family. (419 aa)    
Predicted Functional Partners:
KRN55938.1
Peptidase M42 family protein.
  
  
 0.722
KRN55086.1
Inosine 5-monophosphate dehydrogenase.
   
 
 0.664
KRN55170.1
Peptidase M24; Belongs to the peptidase M24B family.
  
 
 0.604
KRN55576.1
Proline dipeptidase.
  
 
 0.604
KRN55935.1
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
     
 0.596
KRN55936.1
Oligopeptide dipeptide ABC transporter ATPase; Belongs to the ABC transporter superfamily.
     
 0.596
KRN55934.1
Dipeptide transport system permease protein DppC.
     
 0.584
KRN55933.1
Binding-protein-dependent transport system inner membrane protein.
     
 0.583
KRN55376.1
Bifunctional HTH-domain containing protein aminotransferase.
   
  0.466
KRN55591.1
Aspartate aminotransferase.
   
  0.466
Your Current Organism:
Atopobium minutum
NCBI taxonomy Id: 1381
Other names: A. minutum, ATCC 33267, Bacteroides minutum, CCUG 31167, DSM 20586, LMG 9439, LMG:9439, Lactobacillus minutum (sic), Lactobacillus minutus, NCFB 2751, NCIMB 702751, VPI 9428
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