STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN55939.1Amino acid ABC transporter substrate-binding protein, PAAT family. (317 aa)    
Predicted Functional Partners:
KRN55940.1
ABC transporter, permease protein.
 
 0.998
KRN55941.1
ABC transporter, permease protein.
 
 0.996
KRN55942.1
Amino acid ABC transporter ATP-binding protein, PAAT family.
 
 0.994
KRN56151.1
ABC transporter related.
 
 0.986
KRN56150.1
ABC-type amino acid transport signal transduction system, periplasmic component domain.
 
 0.982
KRN54892.1
Chorismate mutase.
    
 0.920
KRN54896.1
Prephenate dehydrogenase.
  
 
 0.912
KRN55376.1
Bifunctional HTH-domain containing protein aminotransferase.
  
 
 0.889
KRN55591.1
Aspartate aminotransferase.
  
 
 0.855
KRN56149.1
ABC-type amino acid transport signal transduction system, periplasmic component domain.
  
     0.756
Your Current Organism:
Atopobium minutum
NCBI taxonomy Id: 1381
Other names: A. minutum, ATCC 33267, Bacteroides minutum, CCUG 31167, DSM 20586, LMG 9439, LMG:9439, Lactobacillus minutum (sic), Lactobacillus minutus, NCFB 2751, NCIMB 702751, VPI 9428
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