STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN53214.1Phage-associated protein. (375 aa)    
Predicted Functional Partners:
KRN53215.1
Hypothetical protein.
 
     0.932
KRN56051.1
UvrD REP helicase.
   
  0.808
KRN55250.1
Hypothetical protein.
 
     0.790
KRN55257.1
SNF2 family DNA RNA helicase.
 
     0.784
KRN54017.1
DNA polymerase I.
 
     0.782
KRN55251.1
Prophage LambdaSa04 DNA-directed DNA polymerase.
 
     0.782
KRN55917.1
single-stranded-DNA-specific exonuclease RecJ.
  
 
  0.456
KRN53216.1
Hypothetical protein.
       0.437
Your Current Organism:
Atopobium minutum
NCBI taxonomy Id: 1381
Other names: A. minutum, ATCC 33267, Bacteroides minutum, CCUG 31167, DSM 20586, LMG 9439, LMG:9439, Lactobacillus minutum (sic), Lactobacillus minutus, NCFB 2751, NCIMB 702751, VPI 9428
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