STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN54110.1Oligopeptide dipeptide ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily. (346 aa)    
Predicted Functional Partners:
KRN54112.1
Oligopeptide ABC superfamily ATP binding cassette transporter, permease protein.
 
 0.998
KRN54113.1
Dipeptide ABC superfamily ATP binding cassette transporter, permease protein.
 
 0.995
KRN55933.1
Binding-protein-dependent transport system inner membrane protein.
 
 0.982
KRN54111.1
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
 
0.979
KRN55934.1
Dipeptide transport system permease protein DppC.
 
 0.977
KRN54132.1
D,D-dipeptide transport system permease protein DdpB.
 
 0.956
KRN55935.1
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
  
 
0.901
KRN54114.1
Hypothetical protein.
 
 
 0.897
KRN55932.1
Family 5 extracellular solute-binding protein.
 
 
 0.832
KRN54131.1
ABC transporter-like protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
0.811
Your Current Organism:
Atopobium minutum
NCBI taxonomy Id: 1381
Other names: A. minutum, ATCC 33267, Bacteroides minutum, CCUG 31167, DSM 20586, LMG 9439, LMG:9439, Lactobacillus minutum (sic), Lactobacillus minutus, NCFB 2751, NCIMB 702751, VPI 9428
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.