Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DSY1007Hypothetical protein; Similarity to COG1533 DNA repair photolyase(Evalue: 2E-29). (295 aa)    
Predicted Functional Partners:
DSY1006
Hypothetical protein.
       0.628
DSY0048
Hypothetical protein.
 
     0.605
DSY0090
Hypothetical protein.
 
     0.566
DSY0047
Hypothetical protein; Similarity to COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.561
DSY0756
Hypothetical protein; Similarity to COG2378 Predicted transcriptional regulator(Evalue: 1E-36).
 
     0.558
DSY0049
Hypothetical protein.
 
     0.536
DSY0023
Hypothetical protein; Similarity to COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)(Evalue: 2E-32).
 
     0.502
DSY2798
Hypothetical protein; Similarity to COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.470
DSY0754
Hypothetical protein.
 
     0.455
DSY3558
Hypothetical protein; Similarity to COG0778 Nitroreductase.
 
    0.436
Your Current Organism:
Desulfitobacterium hafniense
NCBI taxonomy Id: 138119
Other names: D. hafniense Y51, Desulfitobacterium hafniense Y51, Desulfitobacterium hafniense str. Y51, Desulfitobacterium hafniense strain Y51, Desulfitobacterium sp. Y51
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