STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DSY3268Hypothetical protein; Similarity to COG1664 Uncharacterized BCR. (187 aa)    
Predicted Functional Partners:
DSY3267
Similarity to COG0739 Membrane proteins related to metalloendopeptidases(Evalue: 8E-26).
 
   
 0.938
DSY2981
Similarity to COG1776 Chemotaxis protein CheC, inhibitor of MCP methylation(Evalue: 3E-51).
    
 
 0.802
DSY3266
Hypothetical protein.
 
     0.746
DSY3178
Hypothetical protein; Involved in formation and maintenance of cell shape.
 
   
 0.515
DSY4200
Similarity to COG0739 Membrane proteins related to metalloendopeptidases(Evalue: 1E-25).
 
   
 0.496
DSY3171
Similarity to COG0739 Membrane proteins related to metalloendopeptidases.
 
     0.487
DSY3269
Hypothetical protein; Similarity to COG2720 Uncharacterized BCR, vancomycin resistance protein(Evalue: 2E-34).
       0.474
DSY1605
Similarity to COG0739 Membrane proteins related to metalloendopeptidases(Evalue: 1E-29).
 
   
 0.469
DSY4544
Similarity to COG0739 Membrane proteins related to metalloendopeptidases(Evalue: 4E-24).
 
   
 0.456
secF
Hypothetical protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
    0.408
Your Current Organism:
Desulfitobacterium hafniense
NCBI taxonomy Id: 138119
Other names: D. hafniense Y51, Desulfitobacterium hafniense Y51, Desulfitobacterium hafniense str. Y51, Desulfitobacterium hafniense strain Y51, Desulfitobacterium sp. Y51
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