STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DSY3979Hypothetical protein; Similarity to COG2183 Predicted RNA binding protein, contains S1 domain(Evalue: 0). (721 aa)    
Predicted Functional Partners:
DSY1877
Hypothetical protein; Similarity to COG0455 ATPases involved in chromosome partitioning.
   
 0.876
rpoA
Hypothetical protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.838
rpoB
Hypothetical protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.817
rpoZ
Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 0.798
DSY3978
Hypothetical protein; Similarity to COG1228 Imidazolonepropionase and related amidohydrolases(Evalue: 6E-98).
       0.644
DSY1384
Hypothetical protein; Similarity to COG0553 Superfamily II DNA/RNA helicases, SNF2 family(Evalue: 1E-127).
  
 
 0.594
DSY3976
Hypothetical protein; Similarity to COG1214 Inactive homologs of metal-dependent proteases, putative molecular chaperones(Evalue: 7E-34).
  
    0.589
DSY3977
Hypothetical protein; Similarity to COG0802 Predicted ATPase or kinase(Evalue: 2E-23).
       0.576
DSY1826
Hypothetical protein; Similarity to COG0457 TPR-repeat-containing proteins(Evalue: 3E-23).
   
 0.555
DSY1855
Hypothetical protein; Similarity to COG0457 TPR-repeat-containing proteins.
   
 0.555
Your Current Organism:
Desulfitobacterium hafniense
NCBI taxonomy Id: 138119
Other names: D. hafniense Y51, Desulfitobacterium hafniense Y51, Desulfitobacterium hafniense str. Y51, Desulfitobacterium hafniense strain Y51, Desulfitobacterium sp. Y51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.