Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DSY4635Hypothetical protein. (135 aa)    
Predicted Functional Partners:
DSY4634
Similarity to COG0790 TPR repeat proteins.
       0.780
DSY4633
Hypothetical protein.
       0.483
DSY4636
Hypothetical protein; Similarity to COG0210 Superfamily I DNA and RNA helicases(Evalue: 7E-22).
       0.467
DSY4637
Hypothetical protein; Similarity to COG3593 Predicted ATP-dependent endonuclease of the OLD family(Evalue: 1E-35).
       0.467
DSY4632
Hypothetical protein; Similarity to COG3505 Type IV secretory pathway, VirD4 components.
       0.458
Your Current Organism:
Desulfitobacterium hafniense
NCBI taxonomy Id: 138119
Other names: D. hafniense Y51, Desulfitobacterium hafniense Y51, Desulfitobacterium hafniense str. Y51, Desulfitobacterium hafniense strain Y51, Desulfitobacterium sp. Y51
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