STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DSY4693Hypothetical protein; Similarity to COG0425 Predicted redox protein, regulator of disulfide bond formation; Belongs to the sulfur carrier protein TusA family. (197 aa)    
Predicted Functional Partners:
selD
Hypothetical protein; Synthesizes selenophosphate from selenide and ATP.
 
   
 0.943
DSY2746
Hypothetical protein; Similarity to COG1775 Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB(Evalue: 1E-121).
 
    0.827
selA
Selenocysteine synthase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
  
 0.813
selB
Similarity to COG3276 Selenocysteine-specific translation elongation factor(Evalue: 3E-91).
 
   
 0.808
DSY2744
Hypothetical protein; Similarity to COG0520 Selenocysteine lyase(Evalue: 2E-59).
 
 
 
 0.801
DSY0867
Hypothetical protein.
 
   
 0.790
DSY4140
Hypothetical protein; Similarity to COG0520 Selenocysteine lyase(Evalue: 9E-79).
 
 
 
 0.772
iscS
Hypothetical protein; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.
   
 
 0.759
DSY0869
Hypothetical protein; Similarity to COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family(Evalue: 4E-70).
 
 
 
 0.746
DSY4280
Hypothetical protein; Similarity to COG0520 Selenocysteine lyase(Evalue: 4E-83).
 
 
 
 0.732
Your Current Organism:
Desulfitobacterium hafniense
NCBI taxonomy Id: 138119
Other names: D. hafniense Y51, Desulfitobacterium hafniense Y51, Desulfitobacterium hafniense str. Y51, Desulfitobacterium hafniense strain Y51, Desulfitobacterium sp. Y51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.