STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJD34726.1Glycan metabolism protein RagB; Derived by automated computational analysis using gene prediction method: Protein Homology. (540 aa)    
Predicted Functional Partners:
KJD34727.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.928
KJD34724.1
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 28 family.
 
 
   0.708
KJD34825.1
Collagen-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.702
KJD32050.1
Metallophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.699
KJD32212.1
Metallophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.699
KJD34721.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.677
KJD32367.1
Carbohydrate-binding protein SusC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.667
KJD32378.1
Carbohydrate-binding protein SusC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.667
KJD34734.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.641
KJD34754.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.637
Your Current Organism:
Tamlana nanhaiensis
NCBI taxonomy Id: 1382798
Other names: CGMCC 1.12469, LMG 27420, LMG:27420, MCCC 1A06648, T. nanhaiensis, Tamlana sp. FHC16, strain FHC16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.