STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJD31503.1AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)    
Predicted Functional Partners:
KJD31502.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.821
KJD34166.1
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.721
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.548
KJD31501.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.529
KJD31504.1
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.523
KJD31505.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.523
KJD31506.1
Biotin attachment protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.523
KJD33580.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.488
Your Current Organism:
Tamlana nanhaiensis
NCBI taxonomy Id: 1382798
Other names: CGMCC 1.12469, LMG 27420, LMG:27420, MCCC 1A06648, T. nanhaiensis, Tamlana sp. FHC16, strain FHC16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.