STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRO02980.1Transcriptional regulator, RpiR family protein. (266 aa)    
Predicted Functional Partners:
KRO02352.1
Pts system beta-glucoside-specific eiibca component.
  
 
 0.967
nifJ
Pyruvate ferredoxin (flavodoxin) oxidoreductase.
  
 
  0.924
treP
Pts system, trehalose-specific iibc component.
  
 
 0.882
KRO02979.1
Phosphatase YidA.
  
 
  0.740
KRO02370.1
Transcriptional regulator, RpiR family.
  
     0.544
KRO01604.1
Major facilitator superfamily MFS 1.
  
  
 0.509
manA
Mannose-6-phosphate isomerase, class I.
  
 
 0.487
KRO02014.1
Glycosyl transferase family 8.
  
     0.485
KRO03290.1
Aldehyde-alcohol dehydrogenase 2; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.421
KRO02975.1
Hypothetical protein.
  
    0.419
Your Current Organism:
Atopobium rimae
NCBI taxonomy Id: 1383
Other names: A. rimae, ATCC 49626, CCUG 31168, DSM 7090, IFO 15546, JCM 10299, LMG 11476, LMG:11476, Lactobacillus rimae, NBRC 15546, VPI D140H-11A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.