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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRO03086.1Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer. (375 aa)    
Predicted Functional Partners:
KRO03085.1
Galactokinase; Belongs to the GHMP kinase family.
 
 0.998
KRO02352.1
Pts system beta-glucoside-specific eiibca component.
  
 
 0.950
KRO02526.1
Glucokinase, ROK family.
  
 
 0.909
KRO01826.1
ROK family protein.
  
 
 0.906
treP
Pts system, trehalose-specific iibc component.
     
 0.850
galT
Galactose-1-phosphate uridylyltransferase.
 
  
 0.838
KRO03087.1
LacI-family transcriptional regulator.
 
   
 0.708
galE
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
 
 0.686
KRO01483.1
Glycosyl hydrolase; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.616
KRO01452.1
6-phospho-beta-galactosidase; Belongs to the glycosyl hydrolase 1 family.
 
 
 0.505
Your Current Organism:
Atopobium rimae
NCBI taxonomy Id: 1383
Other names: A. rimae, ATCC 49626, CCUG 31168, DSM 7090, IFO 15546, JCM 10299, LMG 11476, LMG:11476, Lactobacillus rimae, NBRC 15546, VPI D140H-11A
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