Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KRO03195.1Peptidase family M20 M25 M40. (498 aa)    
Predicted Functional Partners:
KRO02880.1
Pyridine nucleotide-disulfide oxidoreductase family protein.
 
 
 0.776
KRO01586.1
Ferredoxin.
  
 
  0.736
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
    
 0.700
KRO01918.1
Selenate reductase, YgfK subunit.
  
 
 0.601
KRO03194.1
Sugar phosphatase SupH.
       0.564
KRO03291.1
Hypothetical protein.
 
 0.499
KRO03196.1
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyl-transferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
     
 0.486
KRO01921.1
Acetylornithine deacetylase.
     
 0.471
pyrD
Dihydroorotate dehydrogenase, catalytic subunit; Catalyzes the conversion of dihydroorotate to orotate.
  
 0.419
KRO03036.1
Aspartate aminotransferase.
    
 0.416
Your Current Organism:
Atopobium rimae
NCBI taxonomy Id: 1383
Other names: A. rimae, ATCC 49626, CCUG 31168, DSM 7090, IFO 15546, JCM 10299, LMG 11476, LMG:11476, Lactobacillus rimae, NBRC 15546, VPI D140H-11A
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