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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRO03221.1Membrane protein. (194 aa)    
Predicted Functional Partners:
KRO01414.1
Cobalt transport protein.
 
 0.994
KRO01415.1
Cobalt import ATP-binding protein CbiO.
  
 0.993
KRO03219.1
Cobalt transport protein.
 
 0.989
KRO01862.1
Cobalt ABC transporter permease protein.
 
 0.920
KRO03220.1
ABC transporter ATP-binding protein.
 
  0.899
KRO01480.1
Cobalt ABC transporter, permease component, CbiQ.
  
 0.896
KRO01481.1
ABC transporter, ATP-binding protein.
  
  0.851
KRO01943.1
Hypothetical protein.
  
  
  0.735
KRO03126.1
Hypothetical protein.
  
     0.732
KRO01861.1
ABC transporter ATP-binding protein.
 
  0.683
Your Current Organism:
Atopobium rimae
NCBI taxonomy Id: 1383
Other names: A. rimae, ATCC 49626, CCUG 31168, DSM 7090, IFO 15546, JCM 10299, LMG 11476, LMG:11476, Lactobacillus rimae, NBRC 15546, VPI D140H-11A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.