Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KRO03229.1Rod shape-determining protein MreB. (347 aa)    
Predicted Functional Partners:
mreC
Rod shape-determining protein MreC.
 
 
 0.994
mrdA
Penicillin-binding protein 2.
 
 
 
 0.951
KRO03225.1
Rod shape-determining protein RodA; Belongs to the SEDS family.
 
 
 0.934
KRO03118.1
Hypothetical protein.
  
 
 0.872
mreD
Rod shape-determining protein MreD.
  
  
 0.860
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
  
 
 0.756
KRO02207.1
Cell cycle protein; Belongs to the SEDS family.
 
 
 0.725
tig
Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.
  
   0.720
nifJ
Pyruvate ferredoxin (flavodoxin) oxidoreductase.
  
 
 0.714
KRO03224.1
Hypothetical protein.
       0.692
Your Current Organism:
Atopobium rimae
NCBI taxonomy Id: 1383
Other names: A. rimae, ATCC 49626, CCUG 31168, DSM 7090, IFO 15546, JCM 10299, LMG 11476, LMG:11476, Lactobacillus rimae, NBRC 15546, VPI D140H-11A
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