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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRO03229.1Rod shape-determining protein MreB. (347 aa)    
Predicted Functional Partners:
mreC
Rod shape-determining protein MreC.
 
 
 0.996
mrdA
Penicillin-binding protein 2.
 
 
 0.963
KRO03225.1
Rod shape-determining protein RodA; Belongs to the SEDS family.
 
 
 0.942
KRO03118.1
Hypothetical protein.
  
 
 0.923
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
  
 
 0.850
mreD
Rod shape-determining protein MreD.
  
  
 0.844
nifJ
Pyruvate ferredoxin (flavodoxin) oxidoreductase.
  
  
 0.809
KRO02207.1
Cell cycle protein; Belongs to the SEDS family.
 
 
 0.809
tuf
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
    
 
 0.725
KRO03005.1
Peptidoglycan glycosyltransferase.
 
 
 0.711
Your Current Organism:
Atopobium rimae
NCBI taxonomy Id: 1383
Other names: A. rimae, ATCC 49626, CCUG 31168, DSM 7090, IFO 15546, JCM 10299, LMG 11476, LMG:11476, Lactobacillus rimae, NBRC 15546, VPI D140H-11A
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