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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRO03338.1Alpha beta superfamily hydrolase. (258 aa)    
Predicted Functional Partners:
nifJ
Pyruvate ferredoxin (flavodoxin) oxidoreductase.
  
 
 0.914
KRO03290.1
Aldehyde-alcohol dehydrogenase 2; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
   
 0.838
KRO03241.1
Chorismate mutase.
     
 0.833
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
   
  0.814
KRO03311.1
Hypothetical protein.
  
 0.809
KRO01620.1
Lipoprotein.
    
  0.642
KRO02322.1
NADPH-dependent butanol dehydrogenase.
     
 0.638
KRO03193.1
NADH oxidase.
   
 
 0.613
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
   
   0.609
atpG
ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
   
   0.609
Your Current Organism:
Atopobium rimae
NCBI taxonomy Id: 1383
Other names: A. rimae, ATCC 49626, CCUG 31168, DSM 7090, IFO 15546, JCM 10299, LMG 11476, LMG:11476, Lactobacillus rimae, NBRC 15546, VPI D140H-11A
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