STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRO02156.1N-acetylmuramoyl-L-alanine amidase domain protein. (351 aa)    
Predicted Functional Partners:
KRO02157.1
Hypothetical protein.
       0.790
KRO02158.1
Hypothetical protein.
       0.705
KRO02912.1
CTP phosphocholine cytidylyltransferase choline kinase.
  
   
 0.703
KRO02159.1
Hypothetical protein.
       0.690
KRO02163.1
Phage tail tape measure protein, family, core region.
       0.682
KRO02160.1
Hypothetical protein.
       0.667
KRO02161.1
Hypothetical protein.
       0.667
KRO02162.1
Hypothetical protein.
       0.667
KRO02164.1
Hypothetical protein.
       0.667
KRO03203.1
NlpC P60 family protein.
  
  
 0.606
Your Current Organism:
Atopobium rimae
NCBI taxonomy Id: 1383
Other names: A. rimae, ATCC 49626, CCUG 31168, DSM 7090, IFO 15546, JCM 10299, LMG 11476, LMG:11476, Lactobacillus rimae, NBRC 15546, VPI D140H-11A
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.