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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRO02174.1Hypothetical protein. (275 aa)    
Predicted Functional Partners:
soj
SpoOJ regulator protein.
  
 
 0.822
KRO02173.1
Phage portal protein.
  
    0.781
clpP-2
ATP-dependent Clp protease proteolytic subunit; Belongs to the peptidase S14 family.
     
 0.776
KRO02171.1
Hypothetical protein.
  
    0.766
KRO02169.1
Hypothetical protein.
       0.762
KRO02170.1
Hypothetical protein.
       0.762
KRO02166.1
Phage major tail protein.
       0.699
KRO02167.1
Hypothetical protein.
       0.699
KRO02168.1
Prophage pi2 protein 37.
       0.699
KRO02175.1
Phage terminase, large subunit.
       0.698
Your Current Organism:
Atopobium rimae
NCBI taxonomy Id: 1383
Other names: A. rimae, ATCC 49626, CCUG 31168, DSM 7090, IFO 15546, JCM 10299, LMG 11476, LMG:11476, Lactobacillus rimae, NBRC 15546, VPI D140H-11A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.