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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRO02175.1Phage terminase, large subunit. (560 aa)    
Predicted Functional Partners:
KRO02173.1
Phage portal protein.
 
   
 0.936
KRO02171.1
Hypothetical protein.
 
   
 0.929
KRO02168.1
Prophage pi2 protein 37.
 
     0.857
KRO02163.1
Phage tail tape measure protein, family, core region.
 
     0.804
KRO02176.1
Hypothetical protein.
       0.773
KRO02177.1
Hypothetical protein.
       0.773
clpP-2
ATP-dependent Clp protease proteolytic subunit; Belongs to the peptidase S14 family.
 
     0.742
KRO02170.1
Hypothetical protein.
       0.702
KRO02174.1
Hypothetical protein.
       0.698
KRO02169.1
Hypothetical protein.
       0.679
Your Current Organism:
Atopobium rimae
NCBI taxonomy Id: 1383
Other names: A. rimae, ATCC 49626, CCUG 31168, DSM 7090, IFO 15546, JCM 10299, LMG 11476, LMG:11476, Lactobacillus rimae, NBRC 15546, VPI D140H-11A
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