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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRO02218.1Hypothetical protein. (641 aa)    
Predicted Functional Partners:
KRO02232.1
Transcriptional regulator, TrmB.
  
    0.775
KRO03230.1
Tetratricopeptide repeat domain protein.
  
     0.771
KRO03118.1
Hypothetical protein.
  
     0.770
KRO01586.1
Ferredoxin.
  
     0.769
KRO03126.1
Hypothetical protein.
  
   
 0.766
KRO01776.1
Hypothetical protein.
  
     0.766
KRO01641.1
Hypothetical protein.
  
     0.766
KRO03333.1
Hypothetical protein.
  
     0.765
KRO03328.1
Hypothetical protein.
  
     0.763
KRO02295.1
Hypothetical protein.
  
     0.760
Your Current Organism:
Atopobium rimae
NCBI taxonomy Id: 1383
Other names: A. rimae, ATCC 49626, CCUG 31168, DSM 7090, IFO 15546, JCM 10299, LMG 11476, LMG:11476, Lactobacillus rimae, NBRC 15546, VPI D140H-11A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.