Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
KRO01781.1Mannose-specific phosphotransferase system component iiab. (332 aa)    
Predicted Functional Partners:
KRO01779.1
Fructose permease iid component.
 
 0.999
KRO01780.1
Fructose permease iic component.
 
 0.999
KRO01501.1
Phosphotransferase enzyme II C component.
 
 0.998
KRO02983.1
Mannose-specific pts system component iicd.
 
 0.997
KRO01500.1
PTS system, IID component.
 
 0.997
KRO03332.1
Phosphocarrier protein HPr.
  
 0.987
KRO02455.1
PTS system, fructose-specific enzyme II, BC component.
  
 
 0.968
KRO03235.1
Heat-responsive suppressor hrsa.
  
 
 0.942
manA
Mannose-6-phosphate isomerase, class I.
 
  
 0.939
KRO01778.1
Hypothetical protein.
 
   
 0.935
Your Current Organism:
Atopobium rimae
NCBI taxonomy Id: 1383
Other names: A. rimae, ATCC 49626, CCUG 31168, DSM 7090, IFO 15546, JCM 10299, LMG 11476, LMG:11476, Lactobacillus rimae, NBRC 15546, VPI D140H-11A
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