Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KRO01794.1Metal-dependent phosphohydrolase HD sub domain protein. (413 aa)    
Predicted Functional Partners:
KRO03138.1
Deoxyguanosinetriphosphate triphosphohydrolase; Belongs to the dGTPase family. Type 2 subfamily.
  
  
 
0.900
KRO01474.1
5-nucleotidase YfbR.
  
 
  0.880
nrdD
Anaerobic ribonucleoside-triphosphate reductase.
     
  0.871
deoD
Purine nucleoside phosphorylase.
     
  0.870
KRO01620.1
Lipoprotein.
     
  0.851
KRO01964.1
Purine nucleoside phosphorylase 1.
    
  0.848
KRO01793.1
Recombination factor protein RarA.
       0.672
KRO01795.1
Hypothetical protein.
       0.605
KRO01796.1
2-keto-3-deoxygluconate permease 1.
       0.535
nifJ
Pyruvate ferredoxin (flavodoxin) oxidoreductase.
     
 0.495
Your Current Organism:
Atopobium rimae
NCBI taxonomy Id: 1383
Other names: A. rimae, ATCC 49626, CCUG 31168, DSM 7090, IFO 15546, JCM 10299, LMG 11476, LMG:11476, Lactobacillus rimae, NBRC 15546, VPI D140H-11A
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