STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRO01796.12-keto-3-deoxygluconate permease 1. (367 aa)    
Predicted Functional Partners:
KRO01795.1
Hypothetical protein.
       0.678
phbB
acetoacetyl-CoA reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
   
 0.658
KRO01797.1
Amino acid transport protein.
       0.542
KRO01794.1
Metal-dependent phosphohydrolase HD sub domain protein.
       0.535
KRO01798.1
Glutamine transport ATP-binding protein GlnQ.
       0.531
KRO01799.1
ABC transporter, permease protein.
       0.531
KRO01800.1
Permease protein of ABC transporter system.
       0.531
KRO03001.1
2-dehydro-3-deoxyphosphogluconate aldolase 4-hydroxy-2-oxoglutarate aldolase.
  
  
 0.471
eda
Hypothetical protein.
  
  
 0.471
KRO01793.1
Recombination factor protein RarA.
       0.453
Your Current Organism:
Atopobium rimae
NCBI taxonomy Id: 1383
Other names: A. rimae, ATCC 49626, CCUG 31168, DSM 7090, IFO 15546, JCM 10299, LMG 11476, LMG:11476, Lactobacillus rimae, NBRC 15546, VPI D140H-11A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.