STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRO01800.1Permease protein of ABC transporter system. (217 aa)    
Predicted Functional Partners:
KRO01798.1
Glutamine transport ATP-binding protein GlnQ.
 
 0.999
KRO01797.1
Amino acid transport protein.
 
 0.998
KRO01799.1
ABC transporter, permease protein.
 
  
 
0.982
KRO01796.1
2-keto-3-deoxygluconate permease 1.
       0.531
KRO01795.1
Hypothetical protein.
       0.472
KRO03075.1
ABC transporter integral membrane subunit.
    
  0.419
KRO01597.1
Multiple sugar-binding transport ATP-binding protein MsmK; Belongs to the ABC transporter superfamily.
    
 0.409
KRO01801.1
T U mismatch-specific DNA glycosylase.
       0.408
Your Current Organism:
Atopobium rimae
NCBI taxonomy Id: 1383
Other names: A. rimae, ATCC 49626, CCUG 31168, DSM 7090, IFO 15546, JCM 10299, LMG 11476, LMG:11476, Lactobacillus rimae, NBRC 15546, VPI D140H-11A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.