Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
csoRCopper-sensing transcriptional repressor CsoR. (117 aa)    
Predicted Functional Partners:
KRO01805.1
Copper-transporting ATPase 2.
 
  
 0.915
KRO01804.1
Fructokinase.
       0.746
KRO01790.1
RNA polymerase sigma-F factor; Belongs to the sigma-70 factor family.
   
   0.614
KRO01802.1
Serine threonine protein phosphatase.
       0.522
KRO01803.1
Hypothetical protein.
       0.522
KRO02878.1
Regulatory protein, ArsR.
 
   
 0.473
KRO01797.1
Amino acid transport protein.
  
  
 0.423
KRO01499.1
ABC export system, membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 0.408
Your Current Organism:
Atopobium rimae
NCBI taxonomy Id: 1383
Other names: A. rimae, ATCC 49626, CCUG 31168, DSM 7090, IFO 15546, JCM 10299, LMG 11476, LMG:11476, Lactobacillus rimae, NBRC 15546, VPI D140H-11A
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