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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csoRCopper-sensing transcriptional repressor CsoR. (117 aa)    
Predicted Functional Partners:
KRO01805.1
Copper-transporting ATPase 2.
 
  
 0.932
KRO01804.1
Fructokinase.
       0.746
KRO01790.1
RNA polymerase sigma-F factor; Belongs to the sigma-70 factor family.
   
   0.695
KRO01802.1
Serine threonine protein phosphatase.
       0.522
KRO01803.1
Hypothetical protein.
       0.522
pheT
phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.515
cadA
Cadmium-translocating P-type ATPase.
 
  
 0.482
KRO02878.1
Regulatory protein, ArsR.
 
   
 0.465
KRO01949.1
Cation transport ATPase, HAD family.
 
  
 0.438
Your Current Organism:
Atopobium rimae
NCBI taxonomy Id: 1383
Other names: A. rimae, ATCC 49626, CCUG 31168, DSM 7090, IFO 15546, JCM 10299, LMG 11476, LMG:11476, Lactobacillus rimae, NBRC 15546, VPI D140H-11A
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