Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KRO01807.1Membrane protein. (428 aa)    
Predicted Functional Partners:
KRO01586.1
Ferredoxin.
  
     0.681
KRO02218.1
Hypothetical protein.
  
     0.658
KRO03333.1
Hypothetical protein.
  
     0.650
KRO01810.1
Membrane protein.
 
     0.622
KRO01795.1
Hypothetical protein.
  
   
 0.611
KRO03230.1
Tetratricopeptide repeat domain protein.
  
     0.597
KRO02232.1
Transcriptional regulator, TrmB.
  
  
 0.570
KRO02857.1
Hypothetical protein.
  
     0.561
KRO01776.1
Hypothetical protein.
  
     0.548
trmU
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.535
Your Current Organism:
Atopobium rimae
NCBI taxonomy Id: 1383
Other names: A. rimae, ATCC 49626, CCUG 31168, DSM 7090, IFO 15546, JCM 10299, LMG 11476, LMG:11476, Lactobacillus rimae, NBRC 15546, VPI D140H-11A
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.