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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRO01810.1Membrane protein. (351 aa)    
Predicted Functional Partners:
trmU
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.773
KRO01809.1
Cysteine desulfurase.
       0.773
KRO03284.1
Permease.
  
     0.696
KRO02011.1
Hypothetical protein.
  
     0.659
KRO01803.1
Hypothetical protein.
  
     0.646
KRO01641.1
Hypothetical protein.
  
     0.639
KRO01807.1
Membrane protein.
 
     0.623
KRO03342.1
Tetratricopeptide repeat domain protein.
  
    0.533
KRO03224.1
Hypothetical protein.
  
     0.492
KRO02337.1
CoA-substrate-specific enzyme activase domain protein.
 
    0.489
Your Current Organism:
Atopobium rimae
NCBI taxonomy Id: 1383
Other names: A. rimae, ATCC 49626, CCUG 31168, DSM 7090, IFO 15546, JCM 10299, LMG 11476, LMG:11476, Lactobacillus rimae, NBRC 15546, VPI D140H-11A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.