Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KRO01829.1Acetyl xylan esterase. (333 aa)    
Predicted Functional Partners:
KRO01828.1
Acetyl xylan esterase (AXE1) family protein.
 
  
 
0.977
KRO01827.1
Dihydrodipicolinate synthase; Catalyzes the reversible aldol cleavage of N-acetylneuraminic acid (sialic acid; Neu5Ac) to form pyruvate and N-acetylmannosamine (ManNAc) via a Schiff base intermediate. Belongs to the DapA family.
 
     0.719
KRO01825.1
Bifunctional enzyme NanE nanK; Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N- acetylglucosamine-6-phosphate (GlcNAc-6-P).
 
     0.712
KRO01831.1
ABC transporter, ATP-binding permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.667
KRO01826.1
ROK family protein.
 
     0.649
KRO01830.1
Oligopeptide transport ATP-binding protein AppF.
       0.578
KRO01832.1
D,D-dipeptide transport system permease protein DdpB.
       0.578
KRO01833.1
ABC-type dipeptide oligopeptide nickel transport system, secreted component.
 
     0.503
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
       0.483
KRO01824.1
Hypothetical protein; Displays ATPase and GTPase activities.
       0.483
Your Current Organism:
Atopobium rimae
NCBI taxonomy Id: 1383
Other names: A. rimae, ATCC 49626, CCUG 31168, DSM 7090, IFO 15546, JCM 10299, LMG 11476, LMG:11476, Lactobacillus rimae, NBRC 15546, VPI D140H-11A
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