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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRO01832.1D,D-dipeptide transport system permease protein DdpB. (318 aa)    
Predicted Functional Partners:
KRO01831.1
ABC transporter, ATP-binding permease protein; Belongs to the binding-protein-dependent transport system permease family.
 0.999
KRO01830.1
Oligopeptide transport ATP-binding protein AppF.
 
 0.996
KRO01833.1
ABC-type dipeptide oligopeptide nickel transport system, secreted component.
 0.993
KRO01817.1
ABC oligopeptide transporter, permease component.
 
 0.989
KRO01933.1
Dipeptide transport system permease protein DppC.
 
 0.980
KRO01932.1
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
 0.964
KRO01816.1
Glutathione import ATP-binding protein GsiA; Belongs to the ABC transporter superfamily.
 
 
 0.927
KRO01931.1
Oligopeptide transport ATP-binding protein AppF; Belongs to the ABC transporter superfamily.
 0.913
KRO01930.1
Extracellular solute-binding protein, family 5.
 0.892
KRO01935.1
Oligopeptide ABC transporter substrate-binding protein.
 0.877
Your Current Organism:
Atopobium rimae
NCBI taxonomy Id: 1383
Other names: A. rimae, ATCC 49626, CCUG 31168, DSM 7090, IFO 15546, JCM 10299, LMG 11476, LMG:11476, Lactobacillus rimae, NBRC 15546, VPI D140H-11A
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