STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRO01835.1Integral membrane protein MviN. (566 aa)    
Predicted Functional Partners:
KRO02204.1
FHA domain containing protein.
  
 
 
 0.968
KRO02207.1
Cell cycle protein; Belongs to the SEDS family.
 
  
 0.833
KRO02205.1
Forkhead-associated protein.
  
 
   0.826
ybaK
YbaK ebsC protein; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.
       0.792
uvrC
Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
       0.791
uvrA
Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
       0.777
KRO03200.1
FHA domain containing protein.
  
 
   0.750
KRO03126.1
Hypothetical protein.
 
     0.645
KRO03230.1
Tetratricopeptide repeat domain protein.
 
    0.613
KRO02232.1
Transcriptional regulator, TrmB.
 
  
 0.610
Your Current Organism:
Atopobium rimae
NCBI taxonomy Id: 1383
Other names: A. rimae, ATCC 49626, CCUG 31168, DSM 7090, IFO 15546, JCM 10299, LMG 11476, LMG:11476, Lactobacillus rimae, NBRC 15546, VPI D140H-11A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.