Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KRO01841.1Hypothetical protein. (261 aa)    
Predicted Functional Partners:
KRO03290.1
Aldehyde-alcohol dehydrogenase 2; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
    
 0.895
nifJ
Pyruvate ferredoxin (flavodoxin) oxidoreductase.
  
 
 0.886
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
   
  0.860
KRO03241.1
Chorismate mutase.
     
 0.842
KRO01842.1
Baat aCyl-coa thioester hydrolase c family protein.
   
 0.794
KRO03311.1
Hypothetical protein.
   
 0.711
KRO02998.1
Hypothetical protein.
  
     0.655
KRO02997.1
Hypothetical protein.
  
  
  0.633
nagA
N-acetylglucosamine-6-phosphate deacetylase.
     
 0.629
KRO01620.1
Lipoprotein.
    
  0.585
Your Current Organism:
Atopobium rimae
NCBI taxonomy Id: 1383
Other names: A. rimae, ATCC 49626, CCUG 31168, DSM 7090, IFO 15546, JCM 10299, LMG 11476, LMG:11476, Lactobacillus rimae, NBRC 15546, VPI D140H-11A
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