Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ilvEBranched-chain amino acid aminotransferase. (355 aa)    
Predicted Functional Partners:
folP
Dihydropteroate synthase 1.
  
 
 0.964
nifJ
Pyruvate ferredoxin (flavodoxin) oxidoreductase.
  
 
 0.958
KRO03241.1
Chorismate mutase.
    
 0.951
KRO03068.1
Homoserine dehydrogenase.
 
 
 0.924
KRO02276.1
L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily.
   
 0.912
thrB
Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.
  
 
 0.894
dpaL
Diaminopropionate ammonia-lyase.
  
 0.882
pflB
Formate acetyltransferase.
     
  0.868
KRO01586.1
Ferredoxin.
  
 
 0.867
aepY
Phosphonopyruvate decarboxylase.
  
 
 0.761
Your Current Organism:
Atopobium rimae
NCBI taxonomy Id: 1383
Other names: A. rimae, ATCC 49626, CCUG 31168, DSM 7090, IFO 15546, JCM 10299, LMG 11476, LMG:11476, Lactobacillus rimae, NBRC 15546, VPI D140H-11A
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