Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KRO01986.1Sensor histidine kinase. (348 aa)    
Predicted Functional Partners:
KRO01987.1
DNA-binding response regulator.
 0.974
KRO02212.1
Integral membrane sensor signal transduction histidine kinase.
 
 
 0.970
KRO02015.1
ABC transporter, permease protein.
 
 
 0.964
KRO02128.1
Response regulator receiver domain protein.
  
 0.926
KRO02285.1
Efflux ABC transporter, permease protein.
 
 
 0.846
KRO01984.1
Bacitracin export ATP-binding protein BceA.
 
 
 
 0.799
KRO01983.1
Efflux ABC transporter, permease protein.
  
     0.767
KRO02213.1
Transcriptional regulatory protein ResD.
 
 0.732
KRO01751.1
Galactose glucose-binding lipoprotein.
    
 0.716
KRO02504.1
Transcriptional regulatory protein YedW.
 
 0.709
Your Current Organism:
Atopobium rimae
NCBI taxonomy Id: 1383
Other names: A. rimae, ATCC 49626, CCUG 31168, DSM 7090, IFO 15546, JCM 10299, LMG 11476, LMG:11476, Lactobacillus rimae, NBRC 15546, VPI D140H-11A
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