STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRO01986.1Sensor histidine kinase. (348 aa)    
Predicted Functional Partners:
KRO01987.1
DNA-binding response regulator.
 0.983
KRO02212.1
Integral membrane sensor signal transduction histidine kinase.
 
 0.963
KRO02128.1
Response regulator receiver domain protein.
  
 0.932
KRO02015.1
ABC transporter, permease protein.
 
 0.857
KRO02213.1
Transcriptional regulatory protein ResD.
 0.822
KRO02504.1
Transcriptional regulatory protein YedW.
 
 0.806
KRO02347.1
DNA-binding response regulator.
 0.804
KRO01563.1
Response regulator receiver protein.
 
 0.799
KRO02966.1
Transcriptional regulator domain protein.
 
 0.786
KRO01751.1
Galactose glucose-binding lipoprotein.
    
 0.781
Your Current Organism:
Atopobium rimae
NCBI taxonomy Id: 1383
Other names: A. rimae, ATCC 49626, CCUG 31168, DSM 7090, IFO 15546, JCM 10299, LMG 11476, LMG:11476, Lactobacillus rimae, NBRC 15546, VPI D140H-11A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.